HL_7TOP_048

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_048 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1329

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOP|1|A25S|A|2220
7TOP|1|A25S|G|2221
7TOP|1|A25S|A|2222
7TOP|1|A25S|A|2223
7TOP|1|A25S|A|2224
7TOP|1|A25S|U|2225

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL36

60S ribosomal protein L36-A

Chain AL42

60S ribosomal protein L42-A