HL_7TOP_051

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7TOP|1|A25S|A|2372, 7TOP|1|A25S|A|2373, 7TOP|1|A25S|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_051 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0831

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|G|2369
7TOP|1|A25S|G|2370
7TOP|1|A25S|G|2371
7TOP|1|A25S|A|2372
7TOP|1|A25S|A|2373
7TOP|1|A25S|C|2374
7TOP|1|A25S|G|2375
7TOP|1|A25S|G|2376
7TOP|1|A25S|G|2377
7TOP|1|A25S|C|2378

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL32

RPL32 isoform 1