HL_7TOP_055

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7TOP|1|A25S|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0959

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7TOP|1|A25S|C|2616
7TOP|1|A25S|U|2617
7TOP|1|A25S|G|2618
7TOP|1|A25S|G|2619
7TOP|1|A25S|G|2620
7TOP|1|A25S|G|2621
7TOP|1|A25S|C|2622
7TOP|1|A25S|G|2623
7TOP|1|A25S|G|2624

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL10

RPL10 isoform 1

Chain AL29

RPL29 isoform 1