HL_7TOP_058
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_058 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1249
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
7TOP|1|A25S|C|2693
7TOP|1|A25S|A|2694
7TOP|1|A25S|A|2695
7TOP|1|A25S|A|2696
7TOP|1|A25S|A|2697
7TOP|1|A25S|G|2698
7TOP|1|A25S|G|2699
7TOP|1|A25S|G|2700
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL10
- RPL10 isoform 1
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL42
- 60S ribosomal protein L42-A
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