HL_7TOP_066

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_066 not in the Motif Atlas

Geometric match to HL_7RQB_064

Geometric discrepancy: 0.083

The information below is about HL_7RQB_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7TOP|1|A25S|C|3025
7TOP|1|A25S|G|3026
7TOP|1|A25S|A|3027
7TOP|1|A25S|G|3028
7TOP|1|A25S|A|3029
7TOP|1|A25S|G|3030

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL40

Ubiquitin-60S ribosomal protein L40