HL_7TOP_068

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7TOP|1|A25S|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0706

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|C|3110
7TOP|1|A25S|U|3111
7TOP|1|A25S|G|3112
7TOP|1|A25S|A|3113
7TOP|1|A25S|A|3114
7TOP|1|A25S|C|3115
7TOP|1|A25S|G|3116
7TOP|1|A25S|C|3117
7TOP|1|A25S|C|3118
7TOP|1|A25S|U|3119
7TOP|1|A25S|C|3120
7TOP|1|A25S|U|3121
7TOP|1|A25S|A|3122
7TOP|1|A25S|A|3123
7TOP|1|A25S|G|3124

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL16

60S ribosomal protein L16-A

Chain AL40

Ubiquitin-60S ribosomal protein L40