HL_7TOP_071

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

7TOP|1|A25S|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0772

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7TOP|1|A25S|G|3303
7TOP|1|A25S|U|3304
7TOP|1|A25S|A|3305
7TOP|1|A25S|U|3306
7TOP|1|A25S|A|3307
7TOP|1|A25S|C|3308
7TOP|1|A25S|G|3309
7TOP|1|A25S|A|3310
7TOP|1|A25S|C|3311

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL31

60S ribosomal protein L31-A