HL_7TOP_075

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7TOP|1|A58S|U|125, 7TOP|1|A58S|U|127, 7TOP|1|A58S|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_075 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.179

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7TOP|1|A58S|G|124
7TOP|1|A58S|U|125
7TOP|1|A58S|A|126
7TOP|1|A58S|U|127
7TOP|1|A58S|U|128
7TOP|1|A58S|C|129

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A25S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

60S ribosomal protein L25