HL_7TOP_078
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 7TOP|1|APTN|C|16, 7TOP|1|APTN|G|18, 7TOP|1|APTN|G|19, 7TOP|1|APTN|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOP_078 not in the Motif Atlas
- Geometric match to HL_6JXM_001
- Geometric discrepancy: 0.2562
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7TOP|1|APTN|C|13
7TOP|1|APTN|A|14
7TOP|1|APTN|G|15
7TOP|1|APTN|C|16
7TOP|1|APTN|C|17
7TOP|1|APTN|U|17|||A
7TOP|1|APTN|G|18
7TOP|1|APTN|G|19
7TOP|1|APTN|U|20
7TOP|1|APTN|A|21
7TOP|1|APTN|G|22
Current chains
- Chain APTN
- tRNAfMet
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: