HL_7TOP_083

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAG

Length

60 nucleotides

Bulged bases

7TOP|1|A25S|U|2453, 7TOP|1|A25S|A|2458, 7TOP|1|A25S|A|2459, 7TOP|1|A25S|U|2460, 7TOP|1|A25S|U|2472, 7TOP|1|A25S|C|2473, 7TOP|1|A25S|U|2498, 7TOP|1|A25S|A|2500

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|C|2444
7TOP|1|A25S|A|2445
7TOP|1|A25S|U|2446
7TOP|1|A25S|A|2447
7TOP|1|A25S|G|2448
7TOP|1|A25S|A|2449
7TOP|1|A25S|G|2450
7TOP|1|A25S|G|2451
7TOP|1|A25S|G|2452
7TOP|1|A25S|U|2453
7TOP|1|A25S|G|2454
7TOP|1|A25S|U|2455
7TOP|1|A25S|A|2456
7TOP|1|A25S|G|2457
7TOP|1|A25S|A|2458
7TOP|1|A25S|A|2459
7TOP|1|A25S|U|2460
7TOP|1|A25S|A|2461
7TOP|1|A25S|A|2462
7TOP|1|A25S|G|2463
7TOP|1|A25S|U|2464
7TOP|1|A25S|G|2465
7TOP|1|A25S|G|2466
7TOP|1|A25S|G|2467
7TOP|1|A25S|A|2468
7TOP|1|A25S|G|2469
7TOP|1|A25S|C|2470
7TOP|1|A25S|U|2471
7TOP|1|A25S|U|2472
7TOP|1|A25S|C|2473
7TOP|1|A25S|G|2474
7TOP|1|A25S|G|2475
7TOP|1|A25S|C|2476
7TOP|1|A25S|G|2477
7TOP|1|A25S|C|2478
7TOP|1|A25S|C|2479
7TOP|1|A25S|A|2480
7TOP|1|A25S|G|2481
7TOP|1|A25S|U|2482
7TOP|1|A25S|G|2483
7TOP|1|A25S|A|2484
7TOP|1|A25S|A|2485
7TOP|1|A25S|A|2486
7TOP|1|A25S|U|2487
7TOP|1|A25S|A|2488
7TOP|1|A25S|C|2489
7TOP|1|A25S|C|2490
7TOP|1|A25S|A|2491
7TOP|1|A25S|C|2492
7TOP|1|A25S|U|2493
7TOP|1|A25S|A|2494
7TOP|1|A25S|C|2495
7TOP|1|A25S|C|2496
7TOP|1|A25S|U|2497
7TOP|1|A25S|U|2498
7TOP|1|A25S|U|2499
7TOP|1|A25S|A|2500
7TOP|1|A25S|U|2501
7TOP|1|A25S|A|2502
7TOP|1|A25S|G|2503

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL36

60S ribosomal protein L36-A

Chain APTN

Transfer RNA; tRNA