HL_7TOR_007

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7TOR|1|A18S|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_007 not in the Motif Atlas

Geometric match to HL_5AXM_001

Geometric discrepancy: 0.3629

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

7TOR|1|A18S|G|377
7TOR|1|A18S|U|378
7TOR|1|A18S|C|379
7TOR|1|A18S|G|380
7TOR|1|A18S|C|381
7TOR|1|A18S|C|382
7TOR|1|A18S|G|383
7TOR|1|A18S|U|384
7TOR|1|A18S|G|385
7TOR|1|A18S|C|386
7TOR|1|A18S|C|387

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8

Chain AS11

40S ribosomal protein S11