HL_7TOR_010

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

7TOR|1|A18S|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_010 not in the Motif Atlas

Geometric match to HL_2HW8_001

Geometric discrepancy: 0.1197

The information below is about HL_2HW8_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7TOR|1|A18S|C|462
7TOR|1|A18S|C|463
7TOR|1|A18S|A|464
7TOR|1|A18S|A|465
7TOR|1|A18S|G|466
7TOR|1|A18S|G|467

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23

Chain AS06

40S ribosomal protein S6