HL_7TOR_013
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_013 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.2051
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7TOR|1|A18S|A|569
7TOR|1|A18S|C|570
7TOR|1|A18S|U|571
7TOR|1|A18S|U|572
7TOR|1|A18S|U|573
7TOR|1|A18S|A|574
7TOR|1|A18S|A|575
7TOR|1|A18S|A|576
7TOR|1|A18S|U|577
7TOR|1|A18S|C|578
7TOR|1|A18S|C|579
7TOR|1|A18S|U|580
7TOR|1|A18S|U|581
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
Coloring options: