HL_7TOR_023

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_023 not in the Motif Atlas

Geometric match to HL_3LQX_001

Geometric discrepancy: 0.1037

The information below is about HL_3LQX_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7TOR|1|A18S|U|1178
7TOR|1|A18S|G|1179
7TOR|1|A18S|C|1180
7TOR|1|A18S|A|1181
7TOR|1|A18S|A|1182
7TOR|1|A18S|A|1183

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a