3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
7TOR|1|A18S|A|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOR_024 not in the Motif Atlas
Geometric match to HL_4WF9_011
Geometric discrepancy: 0.1109
The information below is about HL_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

7TOR|1|A18S|G|1245
7TOR|1|A18S|A|1246
7TOR|1|A18S|C|1247
7TOR|1|A18S|U|1248
7TOR|1|A18S|C|1249
7TOR|1|A18S|A|1250
7TOR|1|A18S|A|1251
7TOR|1|A18S|C|1252
7TOR|1|A18S|A|1253
7TOR|1|A18S|C|1254

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS16
uS9
Chain AS20
40S ribosomal protein S20
Chain AS29
40S ribosomal protein S29
Chain PTRN
Transfer RNA; tRNA

Coloring options:


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