HL_7TOR_037

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

7TOR|1|A28S|G|134, 7TOR|1|A28S|G|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_037 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3314

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7TOR|1|A28S|C|131
7TOR|1|A28S|G|132
7TOR|1|A28S|C|133
7TOR|1|A28S|G|134
7TOR|1|A28S|G|135
7TOR|1|A28S|C|136
7TOR|1|A28S|G|137

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35

Chain AL37

60S ribosomal protein L37