HL_7TOR_047

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

7TOR|1|A28S|A|966, 7TOR|1|A28S|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_047 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.189

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7TOR|1|A28S|C|962
7TOR|1|A28S|G|963
7TOR|1|A28S|A|964
7TOR|1|A28S|G|965
7TOR|1|A28S|A|966
7TOR|1|A28S|C|967
7TOR|1|A28S|C|968
7TOR|1|A28S|C|969
7TOR|1|A28S|G|970

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7