HL_7TOR_060

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

7TOR|1|A28S|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_060 not in the Motif Atlas

Homologous match to HL_8P9A_136

Geometric discrepancy: 0.5806

The information below is about HL_8P9A_136

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TOR|1|A28S|C|1816
7TOR|1|A28S|U|1817
7TOR|1|A28S|G|1818
7TOR|1|A28S|G|1819
7TOR|1|A28S|U|1820
7TOR|1|A28S|G|1821
7TOR|1|A28S|U|1822
7TOR|1|A28S|G|1823

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL21

60S ribosomal protein L21

Chain AL29

eL29