HL_7TOR_061

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7TOR|1|A28S|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_061 not in the Motif Atlas

Homologous match to HL_8C3A_025

Geometric discrepancy: 0.1069

The information below is about HL_8C3A_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOR|1|A28S|G|1864
7TOR|1|A28S|G|1865
7TOR|1|A28S|U|1866
7TOR|1|A28S|A|1867
7TOR|1|A28S|A|1868
7TOR|1|A28S|G|1869
7TOR|1|A28S|C|1870

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10