HL_7TOR_065

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGGGACGCUACG

Length

34 nucleotides

Bulged bases

7TOR|1|A28S|C|2094, 7TOR|1|A28S|A|2104, 7TOR|1|A28S|A|2105, 7TOR|1|A28S|U|2267, 7TOR|1|A28S|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|2087
7TOR|1|A28S|A|2088
7TOR|1|A28S|G|2089
7TOR|1|A28S|U|2090
7TOR|1|A28S|C|2091
7TOR|1|A28S|G|2092
7TOR|1|A28S|G|2093
7TOR|1|A28S|C|2094
7TOR|1|A28S|A|2095
7TOR|1|A28S|G|2096
7TOR|1|A28S|A|2097
7TOR|1|A28S|G|2098
7TOR|1|A28S|C|2099
7TOR|1|A28S|G|2100
7TOR|1|A28S|A|2101
7TOR|1|A28S|G|2102
7TOR|1|A28S|A|2103
7TOR|1|A28S|A|2104
7TOR|1|A28S|A|2105
7TOR|1|A28S|G|2106
7TOR|1|A28S|A|2107
7TOR|1|A28S|G|2108
7TOR|1|A28S|A|2109
7TOR|1|A28S|G|2110
7TOR|1|A28S|G|2261
7TOR|1|A28S|G|2262
7TOR|1|A28S|A|2263
7TOR|1|A28S|C|2264
7TOR|1|A28S|G|2265
7TOR|1|A28S|C|2266
7TOR|1|A28S|U|2267
7TOR|1|A28S|A|2268
7TOR|1|A28S|C|2269
7TOR|1|A28S|G|2270

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7

Chain AL18

eL18

Chain AL29

eL29

Chain ALNW

60S ribosomal protein L28