HL_7TOR_069

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_069 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1444

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TOR|1|A28S|C|2458
7TOR|1|A28S|G|2459
7TOR|1|A28S|A|2460
7TOR|1|A28S|G|2461
7TOR|1|A28S|C|2462
7TOR|1|A28S|G|2463

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15

Chain AL37

60S ribosomal protein L37