HL_7TOR_070

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUC

Length

5 nucleotides

Bulged bases

7TOR|1|A28S|C|2488, 7TOR|1|A28S|C|2489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_070 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.32

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7TOR|1|A28S|G|2487
7TOR|1|A28S|C|2488
7TOR|1|A28S|C|2489
7TOR|1|A28S|U|2490
7TOR|1|A28S|C|2491

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA