HL_7TOR_071

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7TOR|1|A28S|U|2530, 7TOR|1|A28S|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_071 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.1025

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|G|2523
7TOR|1|A28S|U|2524
7TOR|1|A28S|U|2525
7TOR|1|A28S|C|2526
7TOR|1|A28S|A|2527
7TOR|1|A28S|G|2528
7TOR|1|A28S|A|2529
7TOR|1|A28S|U|2530
7TOR|1|A28S|C|2531
7TOR|1|A28S|C|2532

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL25

uL23

Chain AL34

60S ribosomal protein L34