HL_7TOR_088

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7TOR|1|A28S|A|3876, 7TOR|1|A28S|A|3877, 7TOR|1|A28S|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_088 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1032

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|G|3873
7TOR|1|A28S|G|3874
7TOR|1|A28S|G|3875
7TOR|1|A28S|A|3876
7TOR|1|A28S|A|3877
7TOR|1|A28S|C|3878
7TOR|1|A28S|G|3879
7TOR|1|A28S|G|3880
7TOR|1|A28S|G|3881
7TOR|1|A28S|C|3882

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL32

60S ribosomal protein L32