HL_7TOR_091

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7TOR|1|A28S|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_091 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1075

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7TOR|1|A28S|C|4193
7TOR|1|A28S|U|4194
7TOR|1|A28S|G|4195
7TOR|1|A28S|G|4196
7TOR|1|A28S|G|4197
7TOR|1|A28S|G|4198
7TOR|1|A28S|C|4199
7TOR|1|A28S|G|4200
7TOR|1|A28S|G|4201

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL29

eL29

Chain PTRN

Transfer RNA; tRNA