HL_7TOR_104

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7TOR|1|A28S|G|4694, 7TOR|1|A28S|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_104 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.098

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7TOR|1|A28S|C|4688
7TOR|1|A28S|U|4689
7TOR|1|A28S|G|4690
7TOR|1|A28S|A|4691
7TOR|1|A28S|A|4692
7TOR|1|A28S|C|4693
7TOR|1|A28S|G|4694
7TOR|1|A28S|C|4695
7TOR|1|A28S|C|4696
7TOR|1|A28S|U|4697
7TOR|1|A28S|C|4698
7TOR|1|A28S|U|4699
7TOR|1|A28S|A|4700
7TOR|1|A28S|A|4701
7TOR|1|A28S|G|4702

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

uL13

Chain AL40

eL40