HL_7TOR_107

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7TOR|1|A28S|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_107 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1072

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7TOR|1|A28S|G|4975
7TOR|1|A28S|U|4976
7TOR|1|A28S|A|4977
7TOR|1|A28S|G|4978
7TOR|1|A28S|A|4979
7TOR|1|A28S|C|4980
7TOR|1|A28S|G|4981
7TOR|1|A28S|A|4982
7TOR|1|A28S|C|4983

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL17

60S ribosomal protein L17

Chain AL31

60S ribosomal protein L31