HL_7TOR_112

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_112 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3083

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7TOR|1|A58S|G|121
7TOR|1|A58S|G|122
7TOR|1|A58S|U|123
7TOR|1|A58S|U|124
7TOR|1|A58S|C|125
7TOR|1|A58S|C|126
7TOR|1|A58S|U|127
7TOR|1|A58S|C|128
7TOR|1|A58S|C|129

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

uL23