HL_7TOR_116
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_116 not in the Motif Atlas
- Geometric match to HL_4WF9_004
- Geometric discrepancy: 0.353
- The information below is about HL_4WF9_004
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7TOR|1|ETRN|G|31
7TOR|1|ETRN|C|32
7TOR|1|ETRN|U|33
7TOR|1|ETRN|C|34
7TOR|1|ETRN|A|35
7TOR|1|ETRN|U|36
7TOR|1|ETRN|A|37
7TOR|1|ETRN|A|38
7TOR|1|ETRN|C|39
Current chains
- Chain ETRN
- tRNAfMet bound to E-site
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS05
- Ribosomal protein S5
- Chain AS14
- uS11
- Chain AS28
- 40S ribosomal protein S28
- Chain MRNA
- mRNA
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: