HL_7TOR_119
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOR_119 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1153
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7TOR|1|PTRN|G|31
7TOR|1|PTRN|C|32
7TOR|1|PTRN|U|33
7TOR|1|PTRN|C|34
7TOR|1|PTRN|A|35
7TOR|1|PTRN|U|36
7TOR|1|PTRN|A|37
7TOR|1|PTRN|A|38
7TOR|1|PTRN|C|39
Current chains
- Chain PTRN
- tRNAfMet bound to E-site
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS16
- uS9
- Chain ETRN
- Transfer RNA; tRNA
- Chain MRNA
- mRNA
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