HL_7TOR_121

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAUUCU

Length

9 nucleotides

Bulged bases

7TOR|1|A18S|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOR_121 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3583

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TOR|1|A18S|G|155
7TOR|1|A18S|G|156
7TOR|1|A18S|U|157
7TOR|1|A18S|A|158
7TOR|1|A18S|A|159
7TOR|1|A18S|U|160
7TOR|1|A18S|U|161
7TOR|1|A18S|C|162
7TOR|1|A18S|U|163

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24