HL_7TQL_015

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7TQL|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_015 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1129

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7TQL|1|2|U|820
7TQL|1|2|G|821
7TQL|1|2|U|822
7TQL|1|2|U|823
7TQL|1|2|C|824
7TQL|1|2|A|825
7TQL|1|2|A|826
7TQL|1|2|A|827
7TQL|1|2|G|828

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

Isoform 3 of 40S ribosomal protein S24