HL_7TQL_026

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_026 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.0981

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TQL|1|2|A|1353
7TQL|1|2|G|1354
7TQL|1|2|C|1355
7TQL|1|2|G|1356
7TQL|1|2|A|1357
7TQL|1|2|U|1358

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

ribosomal protein uS2

Chain D

40S ribosomal protein S2