HL_7TQL_035

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TQL_035 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2577

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TQL|1|2|C|196
7TQL|1|2|U|197
7TQL|1|2|U|198
7TQL|1|2|C|199
7TQL|1|2|G|200
7TQL|1|2|C|201
7TQL|1|2|G|202
7TQL|1|2|G|203

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8