HL_7TTU_032

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

7TTU|1|1|C|1362, 7TTU|1|1|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_032 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.1185

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7TTU|1|1|G|1361
7TTU|1|1|C|1362
7TTU|1|1|U|1363
7TTU|1|1|C|1364
7TTU|1|1|G|1365
7TTU|1|1|U|1366
7TTU|1|1|C|1367

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L22

Chain Z

50S ribosomal protein L17