HL_7TTU_035

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCGAUUGGAUUGC

Length

15 nucleotides

Bulged bases

7TTU|1|1|G|1496, 7TTU|1|1|U|1498, 7TTU|1|1|U|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_035 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.0988

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|G|1492
7TTU|1|1|U|1493
7TTU|1|1|G|1494
7TTU|1|1|C|1495
7TTU|1|1|G|1496
7TTU|1|1|A|1497
7TTU|1|1|U|1498
7TTU|1|1|U|1499
7TTU|1|1|G|1500
7TTU|1|1|G|1501
7TTU|1|1|A|1502
7TTU|1|1|U|1503
7TTU|1|1|U|1504
7TTU|1|1|G|1505
7TTU|1|1|C|1506

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L17