HL_7TTU_039

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

7TTU|1|1|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_039 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.201

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7TTU|1|1|A|1673
7TTU|1|1|U|1674
7TTU|1|1|G|1675
7TTU|1|1|A|1676
7TTU|1|1|G|1677
7TTU|1|1|A|1678
7TTU|1|1|A|1679
7TTU|1|1|U|1680
7TTU|1|1|U|1681

Current chains

Chain 1

23S rRNA

Nearby chains