HL_7TTU_053

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

7TTU|1|1|U|2332, 7TTU|1|1|U|2333, 7TTU|1|1|A|2337, 7TTU|1|1|A|2338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TTU_053 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.3228

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7TTU|1|1|G|2330
7TTU|1|1|G|2331
7TTU|1|1|U|2332
7TTU|1|1|U|2333
7TTU|1|1|G|2334
7TTU|1|1|G|2335
7TTU|1|1|A|2336
7TTU|1|1|A|2337
7TTU|1|1|A|2338
7TTU|1|1|U|2339
7TTU|1|1|C|2340

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA