HL_7TUT_005

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7TUT|1|K|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3238

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7TUT|1|K|U|204
7TUT|1|K|C|205
7TUT|1|K|U|206
7TUT|1|K|G|207
7TUT|1|K|A|208
7TUT|1|K|U|209
7TUT|1|K|C|210
7TUT|1|K|G|211

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain 8

Calcium load-activated calcium channel

Chain Y

uL24

Chain e

eL32