HL_7TUT_014

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

7TUT|1|K|A|966, 7TUT|1|K|C|967

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_014 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1335

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

7TUT|1|K|C|962
7TUT|1|K|G|963
7TUT|1|K|A|964
7TUT|1|K|G|965
7TUT|1|K|A|966
7TUT|1|K|C|967
7TUT|1|K|C|968
7TUT|1|K|C|969
7TUT|1|K|G|970

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7