HL_7TUT_019

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_019 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0856

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TUT|1|K|U|1389
7TUT|1|K|G|1390
7TUT|1|K|A|1391
7TUT|1|K|A|1392
7TUT|1|K|G|1393
7TUT|1|K|G|1394

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

eL18

Chain a

60S ribosomal protein L27a

Chain i

60S ribosomal protein L36