HL_7TUT_022

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

7TUT|1|K|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_022 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.325

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7TUT|1|K|G|1479
7TUT|1|K|C|1480
7TUT|1|K|C|1481
7TUT|1|K|G|1482
7TUT|1|K|C|1483
7TUT|1|K|G|1484
7TUT|1|K|C|1485
7TUT|1|K|C|1486

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain i

60S ribosomal protein L36