HL_7TUT_032

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

7TUT|1|K|C|2094, 7TUT|1|K|A|2104, 7TUT|1|K|A|2105, 7TUT|1|K|U|2267, 7TUT|1|K|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|2087
7TUT|1|K|A|2088
7TUT|1|K|G|2089
7TUT|1|K|U|2090
7TUT|1|K|C|2091
7TUT|1|K|G|2092
7TUT|1|K|G|2093
7TUT|1|K|C|2094
7TUT|1|K|A|2095
7TUT|1|K|G|2096
7TUT|1|K|A|2097
7TUT|1|K|G|2098
7TUT|1|K|C|2099
7TUT|1|K|G|2100
7TUT|1|K|A|2101
7TUT|1|K|G|2102
7TUT|1|K|A|2103
7TUT|1|K|A|2104
7TUT|1|K|A|2105
7TUT|1|K|G|2106
7TUT|1|K|A|2107
7TUT|1|K|G|2108
7TUT|1|K|A|2109
7TUT|1|K|G|2110
7TUT|1|K|U|2111
7TUT|1|K|G|2112
7TUT|1|K|G|2113
7TUT|1|K|C|2258
7TUT|1|K|G|2259
7TUT|1|K|C|2260
7TUT|1|K|G|2261
7TUT|1|K|G|2262
7TUT|1|K|A|2263
7TUT|1|K|C|2264
7TUT|1|K|G|2265
7TUT|1|K|C|2266
7TUT|1|K|U|2267
7TUT|1|K|A|2268
7TUT|1|K|C|2269
7TUT|1|K|G|2270

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain Q

eL18

Chain b

eL29

Chain r

eL28