HL_7TUT_055

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7TUT|1|K|A|3876, 7TUT|1|K|A|3877, 7TUT|1|K|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0558

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7TUT|1|K|G|3873
7TUT|1|K|G|3874
7TUT|1|K|G|3875
7TUT|1|K|A|3876
7TUT|1|K|A|3877
7TUT|1|K|C|3878
7TUT|1|K|G|3879
7TUT|1|K|G|3880
7TUT|1|K|G|3881
7TUT|1|K|C|3882

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain e

eL32

Chain w

uL3