HL_7TUT_062

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TUT_062 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1002

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7TUT|1|K|U|4321
7TUT|1|K|G|4322
7TUT|1|K|A|4323
7TUT|1|K|A|4324
7TUT|1|K|A|4325
7TUT|1|K|G|4326

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain T

eL21

Chain o

eL42