HL_7U0H_043

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7U0H|1|1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U0H_043 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.1064

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7U0H|1|1|C|1923
7U0H|1|1|U|1924
7U0H|1|1|U|1925
7U0H|1|1|C|1926
7U0H|1|1|G|1927
7U0H|1|1|G|1928

Current chains

Chain 1

25S rRNA

Nearby chains

Chain p

60S ribosomal protein L43-A