HL_7U0H_063

3D structure

PDB id

7U0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7U0H|1|2|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U0H_063 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1673

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7U0H|1|2|G|124
7U0H|1|2|U|125
7U0H|1|2|A|126
7U0H|1|2|U|127
7U0H|1|2|U|128
7U0H|1|2|C|129

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25

Chain n

Pescadillo homolog

Chain q

Ribosome biogenesis protein NOP53