HL_7U2I_035

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7U2I|1|1A|U|1396, 7U2I|1|1A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2I_035 not in the Motif Atlas

Geometric match to HL_7RQB_036

Geometric discrepancy: 0.0498

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7U2I|1|1A|G|1389
7U2I|1|1A|U|1390
7U2I|1|1A|U|1391
7U2I|1|1A|A|1392
7U2I|1|1A|A|1393
7U2I|1|1A|U|1394
7U2I|1|1A|A|1395
7U2I|1|1A|U|1396
7U2I|1|1A|U|1397
7U2I|1|1A|C|1398

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23