HL_7U2I_104

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUCCCAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

7U2I|1|1w|C|31
7U2I|1|1w|U|32
7U2I|1|1w|U|33
7U2I|1|1w|C|34
7U2I|1|1w|C|35
7U2I|1|1w|C|36
7U2I|1|1w|A|37
7U2I|1|1w|A|38
7U2I|1|1w|G|39

Current chains

Chain 1w

A-site Aminoacyl-tRNA Gly-NH-tRNAgly

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1l

30S ribosomal protein S12

Chain 1m

30S ribosomal protein S13

Chain 1v

MG-mRNA