HL_7U2J_030

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

7U2J|1|1A|U|1175, 7U2J|1|1A|G|1176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7U2J_030 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2982

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7U2J|1|1A|G|1171
7U2J|1|1A|G|1173
7U2J|1|1A|A|1174
7U2J|1|1A|U|1175
7U2J|1|1A|G|1176
7U2J|1|1A|A|1177
7U2J|1|1A|C|1178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains